Microbiome metadata standards: Report of the National Microbiome Data Collaborative's workshop and follow-on activities.
- Vangay P, Burgin J, Johnston A, Beck KL, Berrios DC, Blumberg K, Canon S, Chain P, Chandonia JM, Christianson D, Costes SV, Damerow J, Duncan WD, Dundore-Arias JP, Fagnan K, Galazka JM, Gibbons SM, Hays D, Hervey J, Hu B, Hurwitz BL, Jaiswal P, Joachimiak MP, Kinkel L, Ladau J, Martin SL, McCue LA, Miller K, Mouncey N, Mungall C, Pafilis E, Reddy TB, Richardson L, Roux S, Schriml LM, Shaffer JP, Sundaramurthi JC, Thompson LR, Timme RE, Zheng J, Wood-Charlson EM, Eloe-Fadrosh EA
- May 4, 2021
In a recent study led by Pankaj Jaiswal and colleagues from the United States' Lawrence Berkeley National Laboratory, scientists have been working on creating better ways to share information about tiny organisms called microbes. These are not just any bugs; they live in our bodies (like inside us) or around us, playing a big role in keeping us healthy and helping things grow like plants. The researchers held meetings with experts from all over the world who study these little creatures to come up with rules for sharing their findings more easily-kind of like agreeing on how best to describe what you're seeing under a microscope so others can understand it too! They also looked at ways technology could help make this information even easier to share and use. This work is super important because as we learn more about these microbes, they become increasingly relevant in our daily lives-from understanding diseases better to improving agriculture for food production.
The research paper titled "Correction for Vangay et al., 'Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities'" presents a comprehensive analysis on establishing metadata standards within microbiome studies. The study was conducted by an interdisciplinary team led by Pankaj Jaiswal, with contributions from various institutions including Lawrence Berkeley National Laboratory in the United States and European Molecular Biology Laboratory in the UK among others. The methodological approach of this research involved organizing a workshop to discuss challenges faced during microbiome data collection and analysis due to inconsistent metadata standards, followed by developing recommendations for standardized practices based on consensus reached at the meeting. The team employed qualitative methods such as expert interviews, focus groups, and Delphi rounds in addition to quantitative approaches like surveys and statistical analyses of existing data sets.
MLA
P, Vangay, et al. “Microbiome metadata standards: Report of the National Microbiome Data Collaborative's workshop and follow-on activities..” PubMed Central, National Center for Biotechnology Information, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8269219/. Accessed 30 Sept 2026.
Chicago
P, Vangay, et al. “Microbiome metadata standards: Report of the National Microbiome Data Collaborative's workshop and follow-on activities..” PubMed Central. 30 September 2026. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8269219/.